Hybrid stochastic simulations of intracellular reaction-diffusion systems

DOI10.1016/j.compbiolchem.2009.03.002zbMath1403.92098OpenAlexW2037075049WikidataQ37219936 ScholiaQ37219936MaRDI QIDQ1631061

Georgios Kalantzis

Publication date: 5 December 2018

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2009.03.002

zbMATH Keywords

stochastic simulationhybrid algorithmbiochemical networkscalcium dynamicschemical master equation

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Applications of stochastic analysis (to PDEs, etc.) (60H30) Biochemistry, molecular biology (92C40) Cell biology (92C37)

Related Items (3)

A hybrid stochastic method with adaptive time step control for reaction-diffusion systems ⋮ Hybrid semantics for Bio-PEPA ⋮ Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations

Cites Work

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• Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems
• Modeling Calcium Dynamics in Dendritic Spines
• Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems

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