Population-based local search for protein folding simulation in the MJ energy model and cubic lattices

DOI10.1016/j.compbiolchem.2009.06.006zbMath1403.92208OpenAlexW2017414090WikidataQ43427062 ScholiaQ43427062MaRDI QIDQ1631069

Y. Aharonov

Publication date: 5 December 2018

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2009.06.006

zbMATH Keywords

simulated annealingtabu searchstochastic local searchlandscape analysisMiyazawa-Jernigan energy functionprotein folding simulation

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

Cites Work

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• Monte Carlo simulations of systems with complex energy landscapes
• Stochastic protein folding simulation in the three-dimensional HP-model
• Genetic local search for multicast routing with pre-processing by logarithmic simulated annealing
• Cooling Schedules for Optimal Annealing
• Computability and complexity theory

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