A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM

DOI10.1016/j.compbiolchem.2010.12.001zbMath1403.92209DBLPjournals/candc/KavousiMSAM11OpenAlexW1991002661WikidataQ44121654 ScholiaQ44121654MaRDI QIDQ1631282

Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Ali Akbar Moosavi-Movahedi, Babak Nadjar Araabi

Publication date: 6 December 2018

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2010.12.001

zbMATH Keywords

information contentcombined classifierposition specific scoring matrixprotein fold classificationsequence based feature

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (4)

Evidence theoretic protein fold classification based on the concept of hyperfold ⋮ Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping ⋮ CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition ⋮ A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition

Uses Software

• Memtype-2L
• ProtIdent
• PROFEAT
• PSI-BLAST
• BLAST
• Plant-mPLoc
• LOCSVMPSI
• GPCR-GIA
• Signal-CF
• Euk-mPLoc
• KNOTTIN
• GenThreader

Cites Work

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• A Mathematical Theory of Communication
• Limits on the majority vote accuracy in classifier fusion
• Predicting protein fold pattern with functional domain and sequential evolution information
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
• On measuring uncertainty and uncertainty-based information: recent developments
• A new expertness index for assessment of secondary structure prediction engines
• Uncertainty and Information
• Combining Pattern Classifiers
• Decision templates for multiple classifier fusion: An experimental comparison

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