Characterization of BioPlex network by topological properties

DOI10.1016/j.jtbi.2016.08.028zbMath1405.92113OpenAlexW2515833035WikidataQ51555361 ScholiaQ51555361MaRDI QIDQ1664450

Meng Zhou, Yongchun Zuo, Yingli Lv, Shiyuan Wang, Lei Yang, Xiaowen Chen

Publication date: 27 August 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2016.08.028

zbMATH Keywords

random networksprotein interactionstopological patterncorrelation profile

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Uses Software

• pSuc-Lys
• Wenxiang
• DAVID
• iEnhancer-2L
• 2D-MH
• iPPI-Esml
• Prnam-PC
• iMiRNA-PseDPC
• iDHS-EL
• iPPBS-Opt
• iSuc-PseOpt
• iPTM-mLys
• pSumo-CD
• iACP
• iCar-PseCp
• iHyd-PseCp
• iPhos-PseEvo
• iPhos-PseEn
• iROS-gPseKNC
• iRNA-PseU
• FoldRate

Cites Work

• Unnamed Item
• pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
• Some remarks on protein attribute prediction and pseudo amino acid composition
• 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
• The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
• An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
• Bio-entity network for analysis of protein-protein interaction networks
• Collective dynamics of ‘small-world’ networks

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