A new graphical coding of DNA sequence and its similarity calculation

DOI10.1016/j.physa.2013.05.015zbMath1395.92105OpenAlexW2023295262MaRDI QIDQ1673222

Qilin Xiang, Bo Liao, Zhi Cao, Lijun Cai

Publication date: 11 September 2018

Published in: Physica A (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.physa.2013.05.015

zbMATH Keywords

topological indicesDNA primary sequencesimilarities/dissimilaritiesstructure graphic

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (6)

DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment ⋮ A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding ⋮ Weighted measures based on maximizing deviation for alignment-free sequence comparison ⋮ Phylogenetic analysis of DNA sequences based on fractional Fourier transform ⋮ Protein Sequence Comparison Method Based on 3-ary Huffman Coding ⋮ A novel representation of DNA sequence based on CMI coding

Cites Work

• Analysis of similarity/dissimilarity of DNA sequences based on chaos game representation
• Graphical and numerical representations of DNA sequences: Statistical aspects of similarity
• A 3D graphical representation of protein sequences based on the Gray code
• C-curve: a novel 3D graphical representation of DNA sequence based on codons
• Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications
• A 3D graphical representation of DNA sequences and its application

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