Finding metastabilities in reversible Markov chains based on incomplete sampling

DOI10.1515/SPMA-2017-0006zbMath1392.60063OpenAlexW2605682981MaRDI QIDQ1678978

Amir Niknejad, Marcus Weber, Konstantin Fackeldey

Publication date: 8 November 2017

Published in: Special Matrices (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/spma-2017-0006

zbMATH Keywords

transition matrixmolecular simulationsampling strategyMarkov state models

Mathematics Subject Classification ID

Computational methods in Markov chains (60J22) Markov processes: estimation; hidden Markov models (62M05)

Related Items (1)

Computing the Minimal Rebinding Effect for NonReversible Processes

Cites Work

• Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains
• Robust Perron cluster analysis in conformation dynamics
• A Square Root Approximation of Transition Rates for a Markov State Model
• Fast low rank approximations of matrices and tensors
• Fast monte-carlo algorithms for finding low-rank approximations
• Comparison of perturbation bounds for the stationary distribution of a Markov chain
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