HSimulator: hybrid stochastic/deterministic simulation of biochemical reaction networks

DOI10.1155/2017/1232868zbMath1380.90204OpenAlexW2775310880MaRDI QIDQ1693768

Rosario Lombardo, Corrado Priami, Luca Marchetti

Publication date: 31 January 2018

Published in: Complexity (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1155/2017/1232868

zbMATH Keywords

biochemical reaction networksHybrid Rejection-based Stochastic Simulation Algorithm (HRSSA)hybrid stochastic/deterministic simulation

Mathematics Subject Classification ID

Stochastic programming (90C15) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Related Items (2)

HSimulator ⋮ A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks

Uses Software

• COPASI
• HRSSA

Cites Work

• Hybrid representation and simulation of stiff biochemical networks
• Computational challenges in systems biology
• HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
• Computational Methods in Systems Biology
• Numerical Methods for Ordinary Differential Equations

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