Convex hull analysis of evolutionary and phylogenetic relationships between biological groups

DOI10.1016/j.jtbi.2018.07.035zbMath1406.92442OpenAlexW2884721361WikidataQ64360839 ScholiaQ64360839MaRDI QIDQ1714357

Kun Tian, Xin Zhao, Stephen Shing-Toung Yau

Publication date: 31 January 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.07.035

zbMATH Keywords

convex hullphylogenetic analysiscenter pointdisjointgroup comparison

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

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Uses Software

• pSuc-Lys
• PSI-BLAST
• BLAST
• iPro54-PseKNC

Cites Work

• pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
• Geometric pattern matching under Euclidean motion
• On comparing two sequences of numbers and its applications to clustering analysis
• Protein space: a natural method for realizing the nature of protein universe
• Comparison of strings belonging to the same family
• Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance