Modelling conjugation with stochastic differential equations

DOI10.1016/j.jtbi.2009.11.011zbMath1406.92403OpenAlexW1963732026WikidataQ51773119 ScholiaQ51773119MaRDI QIDQ1715294

K. R. Philipsen, H. Hasman, Lasse Engbo Christiansen, Henrik Madsen

Publication date: 4 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.11.011

zbMATH Keywords

hidden Markov modelresistancemathematical modellingAIClikelihood-ratio testhorizontal gene transferSDE\textit{Enterococcus faecium}CTSM

Mathematics Subject Classification ID

Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Cell biology (92C37) Genetics and epigenetics (92D10)

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Uses Software

• PSM

Cites Work

• Static recipient cells as reservoirs of antibiotic resistance during antibiotic therapy
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• Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution
• An Algorithmic Introduction to Numerical Simulation of Stochastic Differential Equations