New method for global alignment of 2 DNA sequences by the tree data structure

DOI10.1016/j.jtbi.2009.12.012zbMath1406.92469OpenAlexW2090191146WikidataQ33520132 ScholiaQ33520132MaRDI QIDQ1715317

Xiao-Qi Qin, Zhao-Hui Qi, Chen-Chen Liu

Publication date: 4 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc7094160

zbMATH Keywords

gapsglobal alignmentalignment treepost-order traversalscoring curve

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

Related Items (3)

DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment ⋮ Comparison of genomic data via statistical distribution ⋮ A combination dimensionality reduction approach to codon position patterns of eubacteria based on their complete genomes

Uses Software

• PSI-BLAST
• BLAST
• GPCR-CA

Cites Work

• General methods of sequence comparison
• Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
• An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
• New 3D graphical representation of DNA sequence based on dual nucleotides
• Unnamed Item

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