DRESS: dimensionality reduction for efficient sequence search

DOI10.1007/s10618-015-0413-2zbMath1405.68465OpenAlexW2065087424MaRDI QIDQ1715895

Alexandra Stefan, Alexios Kotsifakos, Vassilis Athitsos, Panagiotis Papapetrou, Gautam K. Das

Publication date: 29 January 2019

Published in: Data Mining and Knowledge Discovery (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10618-015-0413-2

zbMATH Keywords

biological sequencessimilarity searchalphabet reduction

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Algorithms on strings (68W32)

Uses Software

• Soap
• BLAT
• SSAHA
• PSI-BLAST
• BLAST
• Flamingo
• SAGA

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