\textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics

DOI10.1016/j.jtbi.2018.10.045zbMath1406.92209OpenAlexW2898422721WikidataQ58603311 ScholiaQ58603311MaRDI QIDQ1716916

Rajani Kanta Mahapatra, Subhashree Rout

Publication date: 5 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.10.045

zbMATH Keywords

molecular dynamicshomology modelingmolecular dockingCDPK5 protein

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Uses Software

• Gromacs
• LINCS
• MEGA
• AutoDock Vina
• Chimera
• pSuc-Lys
• PROCHECK
• SMART
• I-TASSER
• PSI-BLAST
• BLAST
• SWISS-MODEL
• Open Babel
• UniProt
• iSS-PseDNC
• CCP4
• Pfam
• ChEMBL
• iACP
• iOri-Human
• iRNA-AI
• pLoc-mEuk
• iRNA-PseColl
• iATC-mHyb
• iRNAm5C-PseDNC
• pLoc-mPlant
• iHSP-PseRAAAC
• iRNA-PseU
• pLoc-mHum
• MODELLER

Cites Work

• pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
• Unnamed Item

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