iRNA-PseKNC(2methyl): identify RNA 2'-O-methylation sites by convolution neural network and Chou's pseudo components

DOI10.1016/j.jtbi.2018.12.034zbMath1406.92217OpenAlexW2906046752WikidataQ90777000 ScholiaQ90777000MaRDI QIDQ1721769

Xianqiang Yang

Publication date: 13 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.12.034

zbMATH Keywords

RNASVMdeep learningconvolution neural network2'-O-methylationCNN

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (1)

iRNA-PseKNC

Uses Software

• LogitBoost
• TensorFlow
• Keras
• pSuc-Lys
• propy
• PseAAC-Builder
• Pse-in-One
• Prnam-PC
• iSuc-PseOpt
• PseKNC
• iRSpot-PseDNC
• iRNA-Methyl
• iMethyl-PseAAC
• iSNO-PseAAC
• iSNO-AAPair
• iNitro-Tyr
• iPTM-mLys
• pSumo-CD
• iCar-PseCp
• iHyd-PseCp
• iPhos-PseEvo
• iPhos-PseEn
• pLoc-mAnimal
• pLoc-mEuk
• iRNA-PseColl
• iRNA-2methyl
• iRNAm5C-PseDNC
• iPreny-PseAAC
• iRSpot-EL
• iPromoter-2L
• pLoc-mGneg
• iKcr-PseEns
• iNuc-STNC
• iProt-Sub
• iRNA-PseU
• iRNA-3typeA
• pLoc-mHum
• pLoc_bal-mHum
• iDNA6mA-PseKNC
• PSOFuzzySVM-TMH
• iPPI-PseAAC
• Quokka
• 2L-piRNA
• iEnhancer-EL
• iRO-3wPseKNC
• iUbiq-Lys
• RMBase
• iNuc-ext-PseTNC
• pLoc_bal-mGpos
• iHyd-PseAAC
• BiRen
• iRSpot-Pse6NC
• PSNO

Cites Work

• Unnamed Item
• pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
• Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
• iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
• Using LogitBoost classifier to predict protein structural classes

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