Computational cell biology. Methods and protocols
DOI10.1007/978-1-4939-8618-7zbMath1417.92006OpenAlexW3107360570MaRDI QIDQ1721982
No author found.
Publication date: 13 February 2019
Published in: Methods in Molecular Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/978-1-4939-8618-7
noisedifferential expressionbig dataRNA-seqregulatory networksmicroRNAprotein-protein interaction networkhost-parasite interactiongenome wide association studyATAC-seqcell cycle transitioncomputational prediction of protein complexcontext filteringdrug toxicity predictiondynamic signallingepigenetic landscapefluorescence activated cell sortinglong non-coding RNAmiRNA-target interaction networkmulti-omicsmultilayer regulatory networksqualitative modelling of regulatory networksrule-based methodsspatial analysis of functional enrichment (SAFE)virus-host interaction
Biochemistry, molecular biology (92C40) Cell biology (92C37) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08) Systems biology, networks (92C42)
Uses Software
- R
- Graphviz
- Bioconductor
- gplots
- PLINK
- gcrma
- edgeR
- igraph
- WGCNA
- BoolNet
- Cytoscape
- COPASI
- Dynagraph
- BioNet
- KEGG
- RedeR
- Cellnoptr
- iPath
- TopHat
- GEOquery
- inSilicoDb
- BioGRID
- CellNOpt
- IntAct
- ClueGO
- ChemSpot
- GCTA
- STRING
- PISKaS
- Kappa
- PISKa
- KaSim
- HIPPIE
- DISEASES
- dmGWAS
- GWAPP
- SignaLink
- iHOP
- AlzPathway
- ConsensusPathDB
- dbPTM
- HuPho
- InnateDB
- MatrixDB
- Negatome
- Phospho.ELM
- iPfam
- PIBASE
- VirHostNet
- VirusMentha
- SQUAD
- Jimena
- miRNet
- miRecords
- SM2miR
- EpimiR
- HTqPCR
- miRTarBase
- NPInter
- WikiPathways
- RTCGA
- inSilicoMerging
- ProtNet
- DOMINE
- IDDI
- MOPED
- PaxDb
- COMPARTMENTS
- ATtRACT
- YEASTRACT
- GNAT
- PathCellNet
- SMPDB
- NET-SYNTHESIS
- PRS
- ANIMO
- STRINGdb
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