Filtering degenerate patterns with application to protein sequence analysis

DOI10.3390/A6020352zbMath1461.92072OpenAlexW2086688696MaRDI QIDQ1736559

Davide Verzotto, Matteo Comin

Publication date: 26 March 2019

Published in: Algorithms (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3390/a6020352

zbMATH Keywords

analysis of biological datadegenerate patternspattern discovery and filtering

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (2)

Filtering degenerate patterns with application to protein sequence analysis ⋮ Editorial: Special issue on algorithms for sequence analysis and storage

Uses Software

• Varun
• MEME
• PROSITE
• WordSpy
• MotifVoter
• CompariMotif
• MUSA
• ARGO
• SPACER
• fREDUCE
• WebMOTIFS
• MotifMiner

Cites Work

• Maximal and minimal representations of gapped and non-gapped motifs of a string
• Detection of subtle variations as consensus motifs
• Filtering degenerate patterns with application to protein sequence analysis
• Generalized String Matching
• Bridging Lossy and Lossless Compression by Motif Pattern Discovery
• Combinatorial Pattern Matching
• Pattern Discovery in Bioinformatics

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