Automatic classification of protein structure using the maximum contact map overlap metric

DOI10.3390/a8040850zbMath1461.92070OpenAlexW1698813217MaRDI QIDQ1736719

Rumen Andonov, Mathilde Le Boudic-Jamin, Gunnar W. Klau, Inken Wohlers, Hristo N. Djidjev

Publication date: 26 March 2019

Published in: Algorithms (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3390/a8040850

zbMATH Keywords

scop\(k\)-nearest neighbor classificationmaximum contact map overlapprotein space metricsuperfamily classification

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Database theory (68P15) Protein sequences, DNA sequences (92D20) Algorithms on strings (68W32)

Related Items (1)

QUBO formulation for the contact map overlap problem

Uses Software

• TM-align
• GR-Align

Cites Work

• Unnamed Item
• Distances between sets based on set commonality
• A modification of the LAESA algorithm for approximated k-NN classification

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