Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach

DOI10.1007/s11538-018-0511-6zbMath1410.92068OpenAlexW2893298367WikidataQ60692046 ScholiaQ60692046MaRDI QIDQ1736946

Venta Terauds, Jeremy G. Sumner

Publication date: 26 March 2019

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-018-0511-6

zbMATH Keywords

group representationsmaximum likelihoodevolutionary distancecircular genomesrearrangement models

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (4)

A new algebraic approach to genome rearrangement models ⋮ A mean first passage time genome rearrangement distance ⋮ Rearrangement events on circular genomes ⋮ Bacterial phylogeny in the Cayley graph

Uses Software

• R
• SageMath
• OEIS

Cites Work

• An algebraic view of bacterial genome evolution
• Position and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomics
• Estimating the expected reversal distance after a fixed number of reversals
• Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement
• Maximum likelihood estimates of pairwise rearrangement distances
• Group-theoretic models of the inversion process in bacterial genomes
• Transforming cabbage into turnip
• On the Enumeration of Polygons
• Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
• Estimating true evolutionary distances between genomes
• A representation-theoretic approach to the calculation of evolutionary distance in bacteria
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