Gene tree species tree reconciliation with gene conversion

DOI10.1007/s00285-019-01331-wzbMath1415.92134arXiv1703.08950OpenAlexW2603273139WikidataQ91605968 ScholiaQ91605968MaRDI QIDQ1741562

Damir Hasić, Eric Tannier

Publication date: 3 May 2019

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1703.08950

zbMATH Keywords

gene conversiongene duplicationall optimal reconciliationsgene lossphylogenetic reconciliation

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of graph theory (05C90) Genetics and epigenetics (92D10) Randomized algorithms (68W20) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (3)

Reconciliation of a gene network and species tree ⋮ Gene tree reconciliation including transfers with replacement is NP-hard and FPT ⋮ Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models

Uses Software

• MLGO

Cites Work

• Exploring the space of gene/species reconciliations with transfers
• Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations
• Inapproximability results for the lateral gene transfer problem
• DLS-trees: a model of evolutionary scenarios

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