Stochastic transcription elongation via rule based modelling

DOI10.1016/j.entcs.2016.09.019zbMath1401.92078OpenAlexW2539040207WikidataQ113317654 ScholiaQ113317654MaRDI QIDQ1744369

Masahiro Hamano

Publication date: 23 April 2018

Full work available at URL: https://doi.org/10.1016/j.entcs.2016.09.019

zbMATH Keywords

free energymaster equationBoltzmann distributionMichaelis-Menten kineticsRNA polymerasechemical equilibriumquasi-steady statesteady-state dynamicsBrownian ratchet modelequilibrium kineticsrule-based modellingtranscription elongation complex

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40) Chemical kinetics in thermodynamics and heat transfer (80A30)

Cites Work

• Stochastic kinetics description of a simple transcription model
• The Michaelis-Menten-Stueckelberg theorem
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• Sustainability of RNA-interference in rule based modelling
• Rule-Based Modelling of Cellular Signalling
• Markov Chains
• Equilibrium and termination II: the case of Petri nets
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