Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments

DOI10.1016/j.jspi.2004.06.037zbMath1058.62099OpenAlexW2002415910MaRDI QIDQ1765642

David R. Cox, Dennis R. Grayson, Rajiv P. Sharma, Robert D. Gibbons, John M. Davis, Dulal Kumar Bhaumik

Publication date: 23 February 2005

Published in: Journal of Statistical Planning and Inference (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jspi.2004.06.037

zbMATH Keywords

Multiple comparisonsSimultaneous prediction intervalsMicroarraycolon cancerStatistical geneticsMolecular genetics

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Order statistics; empirical distribution functions (62G30) Biochemistry, molecular biology (92C40) Sequential statistical analysis (62L10)

Uses Software

• R
• S-PLUS
• sma

Cites Work

• Multi-criterion optimization for genetic network modeling
• Significance analysis of microarrays applied to the ionizing radiation response
• Empirical Bayes Analysis of a Microarray Experiment
• Bayesian Models for Gene Expression With DNA Microarray Data
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• Experimental design for gene expression microarrays
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