Queue-based method for efficient simulation of biological self-assembly systems

DOI10.1016/j.jcp.2004.10.004zbMath1061.92029OpenAlexW2018504427WikidataQ60029828 ScholiaQ60029828MaRDI QIDQ1777046

Rori Rohlfs, Russell Schwartz, Farokh Jamalyaria

Publication date: 12 May 2005

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jcp.2004.10.004

zbMATH Keywords

SimulationQueueSelf-assemblyDiscrete event

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Cell biology (92C37) Continuous-time Markov processes on discrete state spaces (60J27) General biology and biomathematics (92B05) Computational methods for problems pertaining to biology (92-08) Applications of queueing theory (congestion, allocation, storage, traffic, etc.) (60K30)

Related Items (1)

Local Rule Simulations of Capsid Assembly

Cites Work

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• Local rule mechanism for selecting icosahedral shell geometry
• A general algorithm for exact simulation of multicomponent aggregation processes
• Local rule-based theory of virus shell assembly.
• Optimizing static calendar queues

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