Modeling and predicting all-\(\alpha\) transmembrane proteins including helix-helix pairing

DOI10.1016/j.tcs.2004.12.018zbMath1080.68046OpenAlexW2000341272MaRDI QIDQ1781991

Jean-Marc Steyaert, Jérôme Waldispühl

Publication date: 10 June 2005

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2004.12.018

zbMATH Keywords

All-\(\alpha\) transmembrane proteinsFolding modelingHelix-helix pairingMulti-tape \(S\)-attributed grammarStructure prediction

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Grammars and rewriting systems (68Q42) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10) Genetics and epigenetics (92D10)

Related Items (1)

Wavelet multifractal modeling and prediction of transmembrane proteins series

Uses Software

• BIOMCSIM
• RAPTOR
• PyMOL
• MODELLER

Cites Work

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• Monte Carlo simulation of biomolecular systems with BIOMCSIM
• Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems
• Semantics of context-free languages
• Bioinformatics and constraints
• Protein folding simulations and structure predictions

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