Phylogenetic analysis of DNA sequences based on \(k\)-word and rough set theory

DOI10.1016/j.physa.2013.12.025zbMath1395.92100OpenAlexW2068131538MaRDI QIDQ1782617

Meiduo Jia, Yan Yang, Xiaoqing Yu, Changzhong Wang, Chun Li, Ying-ying Zhang

Publication date: 20 September 2018

Published in: Physica A (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.physa.2013.12.025

zbMATH Keywords

DNArough set theoryphylogenetic analysisfeature selection\(k\)-word

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Related Items (3)

Weighted measures based on maximizing deviation for alignment-free sequence comparison ⋮ Phylogenetic analysis of DNA sequences based on fractional Fourier transform ⋮ Prediction of success for polymerase chain reactions using the Markov maximal order model and support vector machine

Uses Software

• DV-Curve

Cites Work

• Visualization of DNA sequences based on 3DD-curves
• Burrows-Wheeler transform and Sturmian words
• A complexity-based measure and its application to phylogenetic analysis
• Normalized Lempel-Ziv complexity and its application in bio-sequence analysis
• A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
• Study of proteome maps using partial ordering
• A generalization of Lempel-Ziv complexity and its application to the comparison of protein sequences
• Directed graphs of DNA sequences and their numerical characterization
• Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications
• Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition
• Distance measures for biological sequences: some recent approaches
• Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
• An extension of the Burrows-Wheeler transform
• A new combinatorial approach to sequence comparison
• On the Complexity of Finite Sequences
• Some invariant properties of ordered information systems under homomorphism

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