Alignment-free comparison of genome sequences by a new numerical characterization

DOI10.1016/j.jtbi.2011.04.003zbMath1397.92196OpenAlexW2141970055WikidataQ45338526 ScholiaQ45338526MaRDI QIDQ1783550

Houqing Zhou, Guohua Huang, Li Xin Xu, Yong-Fan Li

Publication date: 21 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.04.003

zbMATH Keywords

phylogenetic treeDNA sequencegraphical representationalignment-free comparisonnumerical characterization

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (5)

Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization ⋮ Circular helix-like curve: an effective tool of biological sequence analysis and comparison ⋮ Sequence comparison via polar coordinates representation and curve tree ⋮ A novel representation of DNA sequence based on CMI coding ⋮ Biomolecular topology: modelling and analysis

Cites Work

• New 3D graphical representation of DNA sequence based on dual nucleotides
• A 3D graphical representation of DNA sequences and its application
• Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
• Distributional regimes for the number of k -word matches between two random sequences

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