A generalization of substitution evolution models of nucleotides to genetic motifs

DOI10.1016/j.jtbi.2011.07.009zbMath1397.92483OpenAlexW2158135429WikidataQ84729125 ScholiaQ84729125MaRDI QIDQ1786445

Christian J. Michel, Emmanuel Benard

Publication date: 24 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.07.009

zbMATH Keywords

analytical solutionsstochastic modelsresearch softwaregenetic motifssubstitution models

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of stochastic analysis (to PDEs, etc.) (60H30) Protein sequences, DNA sequences (92D20)

Related Items (1)

A new molecular evolution model for limited insertion independent of substitution

Uses Software

• SEGM

Cites Work

• Unnamed Item
• Hadamard phylogenetic methods and the \(n\)-taxon process
• Analytical expression of the purine-pyrimidine codon probability after and before random mutations
• Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns
• A stochastic evolution model for residue insertion-deletion independent from substitution
• Evolution probabilities and phylogenetic distance of dinucleotides
• Codon phylogenetic distance
• An analytical model of gene evolution with 9 mutation parameters: An application to the amino acids coded by the common circular code
• How to establish universal block-matrix factorizations
• Detecting the Dependent Evolution of Biosequences
• An Asymptotic Analysis of a Queueing System with Markov-Modulated Arrivals
• Estimation of evolutionary distances between homologous nucleotide sequences.

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