Neutral networks of sequence to shape maps

DOI10.1016/j.jtbi.2007.09.012zbMath1397.92531arXiv0706.0760OpenAlexW2963206856WikidataQ80111516 ScholiaQ80111516MaRDI QIDQ1788477

Christian M. Reidys, Jing Qin, Emma Yu Jin

Publication date: 8 October 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0706.0760

zbMATH Keywords

shapebipartitediameterneutral networkcomponentcombinatory map

Mathematics Subject Classification ID

Exact enumeration problems, generating functions (05A15) Protein sequences, DNA sequences (92D20)

Cites Work

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• On realizing shapes in the theory of RNA neutral networks
• RNA secondary structures and their prediction
• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties
• Asymptotic enumeration of RNA structures with pseudoknots
• Crossings and nestings in tangled diagrams
• Combinatorics of RNA secondary structures
• Linear trees and RNA secondary structure
• Generic properties of combinatory maps: Neutral networks of RNA secondary structures
• Random induced subgraphs of generalized \(n\)-cubes
• Combinatorics of RNA structures with pseudoknots
• Combinatorics of RNA Hairpins and Cloverleaves
• Random structures

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