The markup is the model: reasoning about systems biology models in the semantic web era

DOI10.1016/j.jtbi.2007.10.023zbMath1398.01041OpenAlexW2090879784WikidataQ28259568 ScholiaQ28259568MaRDI QIDQ1794807

Yanyan Li

Publication date: 16 October 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2007.10.023

zbMATH Keywords

systems biologymetabolic control analysisReinhart Heinrich

Mathematics Subject Classification ID

Biographies, obituaries, personalia, bibliographies (01A70) Systems biology, networks (92C42) History of biology (92-03)

Uses Software

• GEPASI
• Taverna
• COPASI
• BioModels
• Bio-SPICE

Cites Work

• Stoichiometric design of metabolic networks: multifunctionality, clusters, optimization, weak and strong robustness
• Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. I: Theoretical analysis
• Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II: Time hierarchy, enzymatic rate laws, and erythrocyte metabolism
• Evolutionary optimization of metabolic pathways. Theoretical reconstruction of the stoichiometry of ATP and NADH producing systems
• General foundations of high-dimensional model representations
• Sensitivity Analysis in Practice
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