Optimizing the codon usage of synthetic gene with QPSO algorithm

DOI10.1016/J.JTBI.2008.05.010zbMath1400.92180OpenAlexW2074445565WikidataQ51874509 ScholiaQ51874509MaRDI QIDQ1797413

Yanyan Li

Publication date: 22 October 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2008.05.010

zbMATH Keywords

quantum-behaved particle swarm optimizationcodon usagesynonymous codonsynthetic gene

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Quantum algorithms and complexity in the theory of computing (68Q12)

Related Items (5)

COStar: A D-star Lite-based dynamic search algorithm for codon optimization ⋮ Chaotic quantum behaved particle swarm optimization algorithm for solving nonlinear system of equations ⋮ Multiple sequence alignment using the hidden Markov model trained by an improved quantum-behaved particle swarm optimization ⋮ A novel multiobjective quantum-behaved particle swarm optimization based on the ring model ⋮ Quantum-behaved particle swarm optimization for parameter optimization of support vector machine

Uses Software

• PISCES
• JCat
• GeMS
• OPTIMIZER
• Gene Designer
• Synthetic Gene Designer

Cites Work

• Unnamed Item
• Optimality of codon usage in \textit{Escherichia coli} due to load minimization
• Genetic code from tRNA point of view
• Minimization by Random Search Techniques

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