Natural/random protein classification models based on star network topological indices

DOI10.1016/j.jtbi.2008.07.018zbMath1400.92404OpenAlexW2005596839WikidataQ30371299 ScholiaQ30371299MaRDI QIDQ1797713

Fernanda Borges, Cristian Robert Munteanu, Alexandre Lopes De Magalhães, Humberto González Díaz

Publication date: 22 October 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc7094162

zbMATH Keywords

graph theoryprotein structureGDAPython applicationsrandom proteinsS2SNet

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

Related Items (5)

Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices ⋮ The structural complexity of DNA templates -- implications on cellular complexity ⋮ Natural vs. random protein sequences: discovering combinatorics properties on amino acid words ⋮ Analyzing the sequence-structure relationship of a library of local structural prototypes ⋮ Unravelling the relationship between protein sequence and low-complexity regions entropies: interactome implications

Uses Software

• STATISTICA
• Graphviz
• Cell-PLoc
• Python
• PISCES
• wxPython
• S2SNet

Cites Work

• Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
• Prediction of the subcellular location of apoptosis proteins
• Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
• New 3D graphical representation of DNA sequence based on dual nucleotides
• The community structure of human cellular signaling network
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