Properties of a neutral allele model with intragenic recombination
From MaRDI portal
Publication:1836461
DOI10.1016/0040-5809(83)90013-8zbMath0505.62090OpenAlexW2019956985WikidataQ71016132 ScholiaQ71016132MaRDI QIDQ1836461
Publication date: 1983
Published in: Theoretical Population Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/0040-5809(83)90013-8
simulation resultstwo-locus modelexpected homozygosityintragenic recombinationcrossing- overfour- locus modelhomozygosity testinfinite-site neutral allele model
Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)
Related Items
On the divergence of genes in multigene families ⋮ Partitioning, duality, and linkage disequilibria in the Moran model with recombination ⋮ Spread of pedigree versus genetic ancestry in spatially distributed populations ⋮ Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action ⋮ Modeling the effect of inbreeding among founders in linkage analysis ⋮ Fixation probability in a two-locus intersexual selection model ⋮ Estimation of the covariance structure from SNP allele frequencies ⋮ A Markov chain model of coalescence with recombination ⋮ Genealogical properties of subsamples in highly fecund populations ⋮ Solving the migration-recombination equation from a genealogical point of view ⋮ Multi-locus data distinguishes between population growth and multiple merger coalescents ⋮ Asymptotic behavior of a Moran model with mutations, drift and recombination among multiple loci ⋮ Evolution of the ancestral recombination graph along the genome in case of selective sweep ⋮ Consistency of estimators of population scaled parameters using composite likelihood ⋮ The coalescence time of sampled genes in the structured coalescent model ⋮ How to compute the effective size of spatiotemporally structured populations using separation of time scales ⋮ Developments in coalescent theory from single loci to chromosomes ⋮ Sequential Markov coalescent algorithms for population models with demographic structure ⋮ Ancestries of a recombining diploid population ⋮ Consistency of estimators of the population-scaled recombination rate ⋮ Dependency effects in multi-locus match probabilities ⋮ Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium ⋮ Accuracy of the SMC' approximation of structured coalescent ⋮ Sufficiency of the number of segregating sites in the limit under finite-sites mutation ⋮ Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach ⋮ Markov jump processes in modeling coalescent with recombination ⋮ Perfect simulation from population genetic models with selection. ⋮ A renewal theory approach to IBD sharing ⋮ Approximating genealogies for partially linked neutral loci under a selective sweep ⋮ Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes ⋮ An ancestral process with selection in an ecological community ⋮ StepBrothers: inferring partially shared ancestries among recombinant viral sequences ⋮ Sufficiency of the number of segregating sites in the limit under finite-sites mutation ⋮ Chromosome painting: how recombination mixes ancestral colors ⋮ Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population ⋮ The third moments of the site frequency spectrum ⋮ Bayesian Hierarchical Modeling of the HIV Evolutionary Response to Therapy ⋮ The mapping of epistatic effects onto a genealogical tree in haploid populations ⋮ The joint allele frequency spectrum of multiple populations: a coalescent theory approach ⋮ Effect of epistasis and linkage on fixation probability in three-locus models: an ancestral recombination-selection graph approach ⋮ A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning ⋮ A coalescence approach to gene conversion ⋮ How does geographical distance translate into genetic distance? ⋮ Reconstructing evolution of sequences subject to recombination using parsimony ⋮ Solving the selection-recombination equation: ancestral lines and dual processes ⋮ Probability that a sequence is lost without trace under the neutral Wright-Fisher model with recombination ⋮ Genealogical distances under low levels of selection ⋮ NCHB: a method for constructing rooted phylogenetic networks from rooted triplets based on height function and binarization ⋮ Editorial: Coalescent theory has many new branches ⋮ The ancestral selection graph under strong directional selection ⋮ Coalescent simulation in continuous space: algorithms for large neighbourhood size ⋮ A multi-dimensional coalescent process applied to multi-allelic selection models and migration models ⋮ The distribution of waiting distances in ancestral recombination graphs ⋮ Segregating sites in Wright's island model ⋮ The Structure of Level-k Phylogenetic Networks ⋮ Generalized Markov branching trees ⋮ Reconstructing a history of recombinations from a set of sequences ⋮ Selection, recombination, and the ancestral initiation graph ⋮ The time to the ancestor along sequences with recombination ⋮ The ages of mutations in gene trees ⋮ Robust model selection between population growth and multiple merger coalescents ⋮ Backward simulation of ancestors of sampled individuals ⋮ Recombination as a point process along sequences ⋮ The use of sample genealogies for studying a selectively neutral m-loci model with recombination ⋮ Which locus has the oldest allele?
Cites Work
- Unnamed Item
- Neutral two-locus multiple allele models with recombination
- On the number of segregating sites in genetical models without recombination
- The distribution of nucleotide site differences between two finite sequences
- The sampling theory of selectively neutral alleles
- A Probability Method for Treating Inbreeding Systems, Especially with Linked Genes