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A space-efficient algorithm for sequence alignment with inversions and reversals

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Publication:1884840
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DOI10.1016/j.tcs.2004.02.040zbMath1067.90156OpenAlexW2021295875MaRDI QIDQ1884840

Junfeng Wu, Zhi-Zhong Chen, Robert Niewiadomski, Yong Gao, Yang Wang, Guo-Hui Lin

Publication date: 27 October 2004

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2004.02.040


zbMATH Keywords

Dynamic programmingInversionReversalSequence alignment


Mathematics Subject Classification ID

Dynamic programming (90C39)


Related Items (7)

Efficient string-matching allowing for non-overlapping inversions ⋮ Rich words in the block reversal of a word ⋮ Non-overlapping inversion on strings and languages ⋮ Efficient Matching of Biological Sequences Allowing for Non-overlapping Inversions ⋮ Block reversal on finite words ⋮ Alignments with non-overlapping moves, inversions and tandem duplications in \(O(n^{4})\) time ⋮ Alignment with non-overlapping inversions and translocations on two strings



Cites Work

  • Unnamed Item
  • A local algorithm for DNA sequence alignment with inversions
  • Algorithms on Strings, Trees and Sequences


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