Reconstruction of extended Petri nets from time-series data by using logical control functions

DOI10.1007/s00285-012-0511-3zbMath1259.68144OpenAlexW2026482829WikidataQ34149662 ScholiaQ34149662MaRDI QIDQ1937894

Wolfgang Marwan, Markus Durzinsky, Annegret K. Wagler

Publication date: 1 February 2013

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-012-0511-3

zbMATH Keywords

Petri netsreverse engineeringphosphate regulatory networkread arcs and inhibitory arcs

Mathematics Subject Classification ID

Searching and sorting (68P10) Combinatorics in computer science (68R05) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Systems biology, networks (92C42)

Uses Software

• SNOOPY

Cites Work

• An algorithmic framework for network reconstruction
• Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
• The combinatorics of modeling and analyzing biological systems
• A mathematical approach to solve the network reconstruction problem
• Applications and Theory of Petri Nets 2004