A mathematical view on the decoupled sites representation

DOI10.1007/s00285-012-0517-xzbMath1316.92029OpenAlexW2128475927WikidataQ43911555 ScholiaQ43911555MaRDI QIDQ1937904

Johannes W. R. Martini, G. Matthias Ullmann

Publication date: 1 February 2013

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-012-0517-x

zbMATH Keywords

binding energyinteraction energyligand bindingbinding polynomialdecoupled sites representationprotonation

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Biochemistry, molecular biology (92C40)

Related Items (8)

Cooperative binding: a multiple personality ⋮ A model for carrier-mediated biological signal transduction based on equilibrium ligand binding theory ⋮ On the interaction of two different types of ligands binding to the same molecule. I: Basics and the transfer of the decoupled sites representation to systems with n and one binding sites ⋮ On the interaction of different types of ligands binding to the same molecule part II: systems with \(n\) to 2 and \(n\) to 3 binding sites ⋮ Cooperativity, absolute interaction, and algebraic optimization ⋮ Decoupled molecules with binding polynomials of bidegree \((n,2)\) ⋮ A measure to quantify the degree of cooperativity in overall titration curves ⋮ A derivation of the grand canonical partition function for systems with a finite number of binding sites using a Markov chain model for the dynamics of single molecules

Cites Work

• Kinetics of proton diffusion in the regimes of fast and slow exchange between the membrane surface and the bulk solution

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