A study of biases of DNA copy number estimation based on PICR model

DOI10.1007/S11464-011-0125-XzbMath1271.62271OpenAlexW1976429673MaRDI QIDQ1946958

Minghua Deng, Yongjian Kang, Xiaoxing Cheng, Jianghan Qu, Lin Wan, Quan Wang, Min-ping Qian

Publication date: 10 April 2013

Published in: Frontiers of Mathematics in China (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11464-011-0125-x

zbMATH Keywords

copy number variation (CNV)cross-hybridizationsingle-nucleotide polymorphism (SNP) array

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) General topics in computing methodologies (68U01)

Uses Software

• PLASQ
• PICNIC
• CARAT

Cites Work

• The biases of copy numbers from affymetrix SNP arrays and their corrections
• PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data
• Circular binary segmentation for the analysis of array-based DNA copy number data

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