Multiple testing of local maxima for detection of peaks in ChIP-Seq data

DOI10.1214/12-AOAS594zbMath1454.62555arXiv1305.6372WikidataQ30870686 ScholiaQ30870686MaRDI QIDQ1951543

Yanyan Li

Publication date: 6 June 2013

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1305.6372

zbMATH Keywords

kernel smoothingfalse discovery ratematched filtertopological inferencePoisson sequence

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Density estimation (62G07) Paired and multiple comparisons; multiple testing (62J15) Topological data analysis (62R40)

Related Items (6)

Scan statistics on Poisson random fields with applications in genomics ⋮ FDR control of detected regions by multiscale matched filtering ⋮ Intensity estimation of non-homogeneous Poisson processes from shifted trajectories ⋮ The circular SiZer, inferred persistence of shape parameters and application to early stem cell differentiation ⋮ A shape-based cutting and clustering algorithm for multiple change-point detection ⋮ Selection-Corrected Statistical Inference for Region Detection With High-Throughput Assays

Uses Software

• FindPeaks
• PICS

Cites Work

• Multiple testing of local maxima for detection of peaks in 1D
• Consistent estimation of the intensity function of a cyclic Poisson process.
• PICS: Probabilistic Inference for ChIP-seq
• Nonparametric Estimation of the Cumulative Intensity Function for a Nonhomogeneous Poisson Process from Overlapping Realizations
• Dynamic Generalized Linear Models and Bayesian Forecasting
• The Effects of Seat Belt Legislation on British Road Casualties: A Case Study in Structural Time Series Modelling
• The Multiprocess Dynamic Poisson Model
• All of Nonparametric Statistics
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