Convergence rate of Markov chain methods for genomic motif discovery
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Publication:1952443
DOI10.1214/12-AOS1075zbMath1347.62048arXiv1303.2814OpenAlexW2059273542MaRDI QIDQ1952443
Dawn B. Woodard, Jeffrey S. Rosenthal
Publication date: 30 May 2013
Published in: The Annals of Statistics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1303.2814
Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10)
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Cites Work
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- Geometric bounds for eigenvalues of Markov chains
- General state space Markov chains and MCMC algorithms
- Limitations of Markov chain Monte Carlo algorithms for Bayesian inference of phylogeny
- Conditions for rapid mixing of parallel and simulated tempering on multimodal distributions
- Sufficient conditions for torpid mixing of parallel and simulated tempering
- A note on Metropolis-Hastings kernels for general state spaces
- Comparison theorems for reversible Markov chains
- Honest exploration of intractable probability distributions via Markov chain Monte Carlo.
- Ordering and improving the performance of Monte Carlo Markov chains.
- Geometric ergodicity of Metropolis algorithms
- Inference from iterative simulation using multiple sequences
- Computational discovery of gene regulatory binding motifs: a Bayesian perspective
- Markov chain decomposition for convergence rate analysis
- Sufficient burn-in for Gibbs samplers for a hierarchical random effects model.
- Gibbs sampling for a Bayesian hierarchical general linear model
- Convergence rate of Markov chain methods for genomic motif discovery
- On the computational complexity of MCMC-based estimators in large samples
- Logarithmic Sobolev inequalities for finite Markov chains
- Bayesian Models for Multiple Local Sequence Alignment and Gibbs Sampling Strategies
- Optimum Monte-Carlo sampling using Markov chains
- Sequential Monte Carlo Samplers
- Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images
- Improved Bounds for Mixing Rates of Markov Chains and Multicommodity Flow
- The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem
- On the geometric ergodicity of hybrid samplers
- Hidden Markov Models and Disease Mapping
- On the swapping algorithm
- Minorization Conditions and Convergence Rates for Markov Chain Monte Carlo
- Weak consistency of Markov chain Monte Carlo methods
- Shotgun Stochastic Search for “Largep” Regression
- Limiting Behavior of Posterior Distributions when the Model is Incorrect
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