An accurate approximation for the expected site frequency spectrum in a Galton-Watson process under an infinite sites mutation model

DOI10.1016/j.tpb.2019.03.001zbMath1415.92196OpenAlexW2922153943WikidataQ92400521 ScholiaQ92400521MaRDI QIDQ1999480

John L. Spouge

Publication date: 27 June 2019

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tpb.2019.03.001

zbMATH Keywords

site frequency spectrumGalton-Watson processviral reproduction number

Mathematics Subject Classification ID

Epidemiology (92D30) Applications of branching processes (60J85)

Uses Software

• SPMM

Cites Work

• Moments of the frequency spectrum of a splitting tree with neutral Poissonian mutations
• Two moments suffice for Poisson approximations: The Chen-Stein method
• Poisson approximation and the Chen-Stein method. With comments and a rejoinder by the authors
• Modeling sequence evolution in acute HIV-1 infection
• Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population
• On the quantity and quality of single nucleotide polymorphisms in the human genome.
• Birth and death processes with neutral mutations
• Population genetics of neutral mutations in exponentially growing cancer cell populations
• Probability Models for DNA Sequence Evolution
• An infinite-alleles version of the simple branching process
• The age of a mutation in a general coalescent tree
• Branching Processes
• On the Theory of Age-Dependent Stochastic Branching Processes
• Who Invented the Delta Method?
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