Character-based phylogeny construction and its application to tumor evolution

DOI10.1007/978-3-319-58741-7_1zbMath1430.92052OpenAlexW2612150380MaRDI QIDQ2011627

Raffaella Rizzi, Murray Patterson, Mauricio Soto, Gianluca Della Vedova

Publication date: 4 August 2017

Full work available at URL: https://doi.org/10.1007/978-3-319-58741-7_1

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of graph theory (05C90)

Uses Software

• SNV-PPILP
• PyClone
• rec-BTP
• AncesTree
• SPRUCE

Cites Work

• The binary perfect phylogeny with persistent characters
• A colored graph approach to perfect phylogeny with persistent characters
• Haplotyping with missing data via perfect path phylogenies
• Testing for the consecutive ones property, interval graphs, and graph planarity using PQ-tree algorithms
• A linear-time algorithm for the perfect phylogeny haplotype problem
• Phylogeny
• Algorithms on Strings, Trees and Sequences
• A Polynomial-Time Algorithm For the Perfect Phylogeny Problem When the Number of Character States is Fixed
• A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies
• Incomplete Directed Perfect Phylogeny
• On the Generalised Character Compatibility Problem for Non-branching Character Trees
• Research in Computational Molecular Biology
• Research in Computational Molecular Biology
• Efficient algorithms for inferring evolutionary trees
• Minimizing phylogenetic number to find good evolutionary trees

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