Indirect identification of horizontal gene transfer
DOI10.1007/s00285-021-01631-0zbMath1467.92134arXiv2012.08897OpenAlexW3180775633WikidataQ113905498 ScholiaQ113905498MaRDI QIDQ2040274
Marc Hellmuth, Nicolas Wieseke, David Schaller, Manuel Lafond, Peter F. Stadler
Publication date: 13 July 2021
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/2012.08897
binary relationhorizontal gene transferpolynomial-time recognition algorithmxenologyFitch graphgene familiesindirect phylogenetic methodslater-divergence-time
Problems related to evolution (92D15) Applications of graph theory (05C90) Genetics and epigenetics (92D10)
Related Items (2)
Cites Work
- Unnamed Item
- The cluster deletion problem for cographs
- Rooted maximum agreement supertrees
- Complement reducible graphs
- Jungles: A new solution to the host/parasite phylogeny reconciliation problem
- Correction of weighted orthology and paralogy relations -- complexity and algorithmic results
- Reconstructing gene trees from Fitch's xenology relation
- Near-complete multipartite graphs and forbidden induced subgraphs
- Cluster graph modification problems
- Extension operations on sets of leaf-labelled trees
- Orthology relations, symbolic ultrametrics, and cographs
- The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations
- Corrigendum to: ``Best match graphs
- Complexity of modification problems for reciprocal best match graphs
- Reciprocal best match graphs
- Best match graphs and reconciliation of gene trees with species trees
- Alternative characterizations of Fitch's xenology relation
- Best match graphs
- Gene tree reconciliation including transfers with replacement is NP-hard and FPT
- NP-completeness results for edge modification problems
- DLS-trees: a model of evolutionary scenarios
- Complete characterization of incorrect orthology assignments in best match graphs
- Complexity of modification problems for best match graphs
- The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree
- Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model
- H-trees: a Model of Evolutionary Scenarios with Horizontal Gene Transfer
- ON THE APPROXIMABILITY OF MAXIMUM AND MINIMUM EDGE CLIQUE PARTITION PROBLEMS
- A Linear Recognition Algorithm for Cographs
- Inferring a Tree from Lowest Common Ancestors with an Application to the Optimization of Relational Expressions
- Forbidden time travel: Characterization of time-consistent tree reconciliation maps
- Cograph editing: Merging modules is equivalent to editing P_4s
- A short note on undirected Fitch graphs
This page was built for publication: Indirect identification of horizontal gene transfer