Fully Bayesian analysis of allele-specific RNA-seq data

DOI10.3934/mbe.2019389zbMath1470.92224OpenAlexW2969795258WikidataQ91168047 ScholiaQ91168047MaRDI QIDQ2045566

Jarad Niemi, Ignacio Alvarez-Castro

Publication date: 13 August 2021

Published in: Mathematical Biosciences and Engineering (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3934/mbe.2019389

zbMATH Keywords

Markov chain Monte Carlohierarchical modelRNA-seqshrinkage priorsGPUallele-specific expression

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Uses Software

• DEseq
• BayesDA
• GPSeq

Cites Work

• Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
• Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
• Statistical analysis of next generation sequencing data
• The Bayesian Lasso
• Prior distributions for variance parameters in hierarchical models (Comment on article by Browne and Draper)
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