Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference

DOI10.1214/20-AOAS1369zbMath1498.62218arXiv2007.08511OpenAlexW3118014657MaRDI QIDQ2078775

T. Martin Embley, Naomi E. Hannaford, Sarah E. Heaps, Tom M. W. Nye, Tom A. Williams

Publication date: 3 March 2022

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2007.08511

zbMATH Keywords

phylogeneticsrootingcompositional heterogeneityLie Markov models

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to statistics (62-04) Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

Uses Software

• PhyloBayes 3

Cites Work

• Bayesian modelling of compositional heterogeneity in molecular phylogenetics
• Statistical analysis of hominoid molecular evolution
• Lie Markov models
• Lie Markov models with purine/pyrimidine symmetry
• Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies
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