Persistent topology of protein space

DOI10.1007/978-3-030-95519-9_10zbMath1500.92075arXiv2102.06768OpenAlexW3129454445MaRDI QIDQ2080097

Yanyan Li

Publication date: 7 October 2022

Full work available at URL: https://arxiv.org/abs/2102.06768

Mathematics Subject Classification ID

Persistent homology and applications, topological data analysis (55N31) Protein sequences, DNA sequences (92D20)

Uses Software

• Dionysus
• t-SNE
• CATH

Cites Work

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• Angle-based joint and individual variation explained
• CATH
• A topological approach for protein classification
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• A topological measurement of protein compressibility
• Multidimensional scaling. I: Theory and method
• Topology and data
• On the shape of a set of points in the plane
• Geometry Helps to Compare Persistence Diagrams
• An Invitation to Statistics in Wasserstein Space
• Barcodes: The persistent topology of data

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