SBML to bond graphs: from conversion to composition

DOI10.1016/j.mbs.2022.108901zbMath1500.92036OpenAlexW4295136412MaRDI QIDQ2085131

Niloofar Shahidi, Michael Pan, Kenneth Tran, David P. Nickerson, Edmund J. Crampin

Publication date: 14 October 2022

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2022.108901

zbMATH Keywords

bond graphsglycolysisSBMLpentose phosphate pathwayautomatic conversionbiomodels

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Software, source code, etc. for problems pertaining to biology (92-04) Systems biology, networks (92C42)

Uses Software

• BioNetGen
• libSBML
• SBMLsimulator
• BioModels
• SimpleSBML
• SemanticSBML

Cites Work

• Unnamed Item
• A thermodynamic framework for modelling membrane transporters
• Energy-based analysis of biomolecular pathways
• Hierarchical bond graph modelling of biochemical networks
• Modeling and analysis of mass-action kinetics

This page was built for publication: SBML to bond graphs: from conversion to composition