A Python hands-on tutorial on network and topological neuroscience

DOI10.1007/978-3-030-80209-7_71zbMath1486.92008OpenAlexW3181458950MaRDI QIDQ2117924

Giulia Moreni, Chris Vriend, Fernando Antônio Nóbrega Santos, Eduarda Gervini Zampieri Centeno, Linda Douw

Publication date: 22 March 2022

Full work available at URL: https://doi.org/10.1007/978-3-030-80209-7_71

zbMATH Keywords

topological data analysisdata visualisationnetwork neuroscience

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biomedical imaging and signal processing (92C55) Neural networks for/in biological studies, artificial life and related topics (92B20) Topological data analysis (62R40)

Uses Software

• NetworkX
• SciPy
• Gudhi
• Python
• CliqueTop

Cites Work

• Unnamed Item
• Networks beyond pairwise interactions: structure and dynamics
• The maximum clique problem
• Cliques and cavities in the human connectome
• Modern approaches to discrete curvature
• The Gudhi Library: Simplicial Complexes and Persistent Homology
• Clique topology reveals intrinsic geometric structure in neural correlations
• What can topology tell us about the neural code?
• Topology and data
• Handbook of Graph Theory
• Topology for Computing
• Topological Signal Processing Over Simplicial Complexes
• Collective dynamics of ‘small-world’ networks

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