Computational modelling of nephron progenitor cell movement and aggregation during kidney organogenesis

DOI10.1016/j.mbs.2021.108759zbMath1486.92022OpenAlexW4226031857MaRDI QIDQ2118503

Anna Marciniak-Czochra, Franz Schaefer, Seppo Vainio, Veli-Pekka Ronkainen, Ilya Skovorodkin, James A. Glazier, Pauli Tikka, James P. Sluka, Moritz Mercker, Ulla Saarela

Publication date: 22 March 2022

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2021.108759

zbMATH Keywords

particle swarm optimizationself-organizing mapscellular Potts modelCompuCell3Dearly nephrogenesisPython analysis functions

Mathematics Subject Classification ID

Developmental biology, pattern formation (92C15) Cell movement (chemotaxis, etc.) (92C17)

Uses Software

• GitHub
• CompuCell3D
• MiniSom

Cites Work

• Self-organized formation of topologically correct feature maps

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