Efficient computation of sequence mappability
From MaRDI portal
Publication:2134748
DOI10.1007/s00453-022-00934-yOpenAlexW4210367916MaRDI QIDQ2134748
Juliusz Straszyński, Panagiotis Charalampopoulos, Solon P. Pissis, Costas S. Iliopoulos, Tomasz Kociumaka, Jakub Radoszewski
Publication date: 3 May 2022
Published in: Algorithmica (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1807.11702
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Efficient string matching with k mismatches
- Parallel string matching with k mismatches
- Which problems have strongly exponential complexity?
- Applying the positional Burrows-Wheeler transform to all-pairs Hamming distance
- Longest common substrings with \(k\) mismatches
- Longest common substring with approximately \(k\) mismatches
- Longest Common Prefix with Mismatches
- Suffix Arrays: A New Method for On-Line String Searches
- Linear work suffix array construction
- Dictionary matching and indexing with errors and don't cares
- Efficient randomized pattern-matching algorithms
- Longest Common Prefixes with k-Mismatches and Applications
- Linear-Time Algorithm for Long LCF with k Mismatches
- On the sorting-complexity of suffix tree construction
- Lowest common ancestors in trees and directed acyclic graphs
- Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis
- Faster algorithms for 1-mappability of a sequence
- On the complexity of \(k\)-SAT
- Efficient computation of sequence mappability
- Longest common prefixes with \(k\)-errors and applications