The bounded coalescent model: conditioning a genealogy on a minimum root date

DOI10.1016/j.jtbi.2022.111186zbMath1493.92038OpenAlexW4281697987WikidataQ114153920 ScholiaQ114153920MaRDI QIDQ2159034

Yanyan Li

Publication date: 26 July 2022

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2022.111186

zbMATH Keywords

coalescent modelphylogeneticsmost recent common ancestorphylodynamicsheterochronous sampling

Mathematics Subject Classification ID

Problems related to evolution (92D15) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

BoundedCoalescent

Uses Software

• R
• ape
• Rcpp
• SimPhy
• phylodyn
• phyloscanner

Cites Work

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• Line-of-descent and genealogical processes, and their applications in population genetics models
• The coalescent and genealogical process in geographically structured population
• The coalescent
• Coalescing into the 21st century: An overview and prospects of coalescent theory
• Ancestral processes with selection
• The latent roots of certain Markov chains arising in genetics: A new approach, I. Haploid models
• Seamless R and C++ Integration with Rcpp
• Hidden Markov Models for Time Series

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