Phylogenetic placement problem: a hyperbolic embedding approach

DOI10.1007/978-3-031-06220-9_5zbMath1494.92079OpenAlexW4285180474MaRDI QIDQ2163947

Yueyu Jiang, Siavash Mirarab, Puoya Tabaghi

Publication date: 11 August 2022

Full work available at URL: https://doi.org/10.1007/978-3-031-06220-9_5

zbMATH Keywords

hyperbolic spacestree embeddingdeep learningphylogenetic placementdistance-based phylogenetics

Mathematics Subject Classification ID

Artificial neural networks and deep learning (68T07) Problems related to evolution (92D15)

Uses Software

• RNAmmer
• SimPhy
• Phylo-MCOA
• ASTRAL-II
• FastMe
• DEPP
• APPLES
• DEPP

Cites Work

• A `stochastic safety radius' for distance-based tree reconstruction
• Phylogenetic trees and Euclidean embeddings
• The performance of neighbor-joining methods of phylogenetic reconstruction
• Comparison of phylogenetic trees
• Geometry of the space of phylogenetic trees
• The geometry of graphs and some of its algorithmic applications
• Low Distortion Delaunay Embedding of Trees in Hyperbolic Plane

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