Metagenomics binning of long reads using read-overlap graphs

DOI10.1007/978-3-031-06220-9_15zbMath1496.92055OpenAlexW4285196200MaRDI QIDQ2163969

Anuradha Wickramarachchi, Yu Lin

Publication date: 11 August 2022

Full work available at URL: https://doi.org/10.1007/978-3-031-06220-9_15

zbMATH Keywords

long readsmetagenomics binningread-overlap graph

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Related Items

oblr

Uses Software

• Silhouettes
• PyTorch
• GitHub
• SimLoRD
• Minimap2
• UMAP
• RAPIDS
• hdbscan
• metaFlye
• MetaQUAST
• AMBER
• Centrifuge
• Seq2Vec
• LRBinner
• MetaBCC-LR
• MaxBin
• MetaBAT
• OGRE

Cites Work

• Silhouettes: a graphical aid to the interpretation and validation of cluster analysis
• LRBinner: Binning Long Reads in Metagenomics Datasets
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