DeepMinimizer: a differentiable framework for optimizing sequence-specific minimizer schemes

DOI10.1007/978-3-031-04749-7_4zbMath1496.92067OpenAlexW4285283141MaRDI QIDQ2170124

Hongyu Zheng, Carl Kingsford, Minh A. Hoang

Publication date: 30 August 2022

Full work available at URL: https://doi.org/10.1007/978-3-031-04749-7_4

zbMATH Keywords

optimizationdeep learningsequence sketching

Mathematics Subject Classification ID

Artificial neural networks and deep learning (68T07) Protein sequences, DNA sequences (92D20)

Uses Software

• Gerbil
• KMC
• Adam
• Minimap2
• Winnowing

Cites Work

• A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets

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